Run ID: ERR2229482
Sample name:
Date: 31-03-2023 17:14:18
Number of reads: 549398
Percentage reads mapped: 99.37
Strain: lineage4
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rpoB | 759625 | c.-182C>A | upstream_gene_variant | 0.2 |
rpoB | 761152 | p.Leu449Gln | missense_variant | 0.33 |
mmpL5 | 776195 | c.2286G>C | synonymous_variant | 0.22 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781716 | c.160dupC | frameshift_variant | 0.2 |
rplC | 800922 | c.114C>T | synonymous_variant | 0.13 |
fbiC | 1303402 | p.Ala158Ser | missense_variant | 0.14 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
embR | 1416853 | c.495G>A | synonymous_variant | 0.15 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474417 | n.760A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476196 | n.2540delT | non_coding_transcript_exon_variant | 0.2 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.4 |
fabG1 | 1673933 | p.Arg165Leu | missense_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155330 | p.Glu261Gly | missense_variant | 0.14 |
katG | 2156257 | c.-146T>C | upstream_gene_variant | 0.18 |
PPE35 | 2167745 | p.Thr956Arg | missense_variant | 0.12 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169488 | c.1125G>C | synonymous_variant | 0.12 |
PPE35 | 2169491 | c.1122T>C | synonymous_variant | 0.12 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.92 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.92 |
PPE35 | 2170229 | c.384A>G | synonymous_variant | 0.27 |
PPE35 | 2170232 | c.381T>A | synonymous_variant | 0.27 |
PPE35 | 2170238 | c.375T>G | synonymous_variant | 0.29 |
PPE35 | 2170247 | p.Ile122Met | missense_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289694 | c.-453G>T | upstream_gene_variant | 0.15 |
kasA | 2518606 | c.492G>C | synonymous_variant | 0.17 |
ahpC | 2726371 | c.180dupG | frameshift_variant | 0.2 |
ahpC | 2726702 | c.510C>A | synonymous_variant | 0.14 |
thyA | 3074645 | c.-174T>G | upstream_gene_variant | 0.27 |
fprA | 3474162 | c.156G>T | synonymous_variant | 0.15 |
fbiA | 3640880 | p.Leu113Arg | missense_variant | 0.2 |
fbiA | 3640888 | c.349delC | frameshift_variant | 0.17 |
rpoA | 3877985 | p.Thr175Ala | missense_variant | 0.11 |
rpoA | 3878000 | p.Pro170Ser | missense_variant | 0.12 |
clpC1 | 4039031 | c.1674T>C | synonymous_variant | 0.12 |
clpC1 | 4039042 | p.Ser555Thr | missense_variant | 0.14 |
clpC1 | 4039525 | p.Phe394Leu | missense_variant | 0.29 |
clpC1 | 4039829 | p.Leu292Ile | missense_variant | 0.27 |
embC | 4240777 | c.915G>A | synonymous_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4243069 | p.Asp1069Glu | missense_variant | 0.17 |
embA | 4244366 | c.1134C>A | synonymous_variant | 0.5 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.24 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.21 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.24 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.24 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.19 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.18 |
embB | 4248573 | p.His687Pro | missense_variant | 0.22 |
embB | 4249323 | p.Ala937Glu | missense_variant | 0.29 |
aftB | 4268044 | p.Ala265Thr | missense_variant | 0.2 |
aftB | 4268119 | p.Ala240Ser | missense_variant | 0.18 |
ethA | 4326229 | p.Asp415Glu | missense_variant | 0.17 |
ethA | 4326966 | p.Asp170Tyr | missense_variant | 0.12 |
ethA | 4327074 | p.Leu134Val | missense_variant | 0.12 |
whiB6 | 4338275 | p.Glu83* | stop_gained | 0.25 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |