Run ID: ERR2229556
Sample name:
Date: 31-03-2023 17:18:34
Number of reads: 968702
Percentage reads mapped: 99.46
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576100 | p.Asp251Glu | missense_variant | 0.23 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.21 |
mshA | 576113 | p.Arg256Gly | missense_variant | 0.13 |
mshA | 576186 | p.Pro280His | missense_variant | 0.12 |
ccsA | 620184 | c.294C>G | synonymous_variant | 0.17 |
ccsA | 620512 | p.Gly208Cys | missense_variant | 0.12 |
rpoC | 765359 | p.Ala664Ser | missense_variant | 0.12 |
rpoC | 766284 | p.Thr972Ile | missense_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775694 | c.2787C>T | synonymous_variant | 0.18 |
mmpL5 | 775697 | c.2784G>C | synonymous_variant | 0.18 |
mmpL5 | 777978 | p.Ala168Glu | missense_variant | 0.12 |
mmpS5 | 778845 | p.Ala21Thr | missense_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 801241 | p.His145Asn | missense_variant | 0.13 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475234 | n.1577C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475236 | n.1579A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476383 | n.2728delG | non_coding_transcript_exon_variant | 0.12 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.19 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918034 | p.Val32Glu | missense_variant | 0.15 |
katG | 2154400 | p.Arg571Pro | missense_variant | 0.15 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2168865 | p.Thr583Met | missense_variant | 0.15 |
PPE35 | 2169212 | p.Ile467Met | missense_variant | 0.11 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.33 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.33 |
PPE35 | 2170532 | c.81G>C | synonymous_variant | 0.13 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518809 | p.Lys232Arg | missense_variant | 0.19 |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.12 |
kasA | 2519087 | p.Ala325Thr | missense_variant | 0.12 |
folC | 2746772 | p.Val276Gly | missense_variant | 0.22 |
Rv2752c | 3065702 | p.Thr164Ser | missense_variant | 0.15 |
thyX | 3067860 | p.Ala29Gly | missense_variant | 0.12 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
fprA | 3474981 | c.975C>A | synonymous_variant | 0.15 |
Rv3236c | 3612717 | p.Ala134Thr | missense_variant | 0.12 |
alr | 3840662 | c.759G>C | synonymous_variant | 0.11 |
rpoA | 3877804 | p.Gly235Val | missense_variant | 0.12 |
rpoA | 3878490 | c.18C>G | synonymous_variant | 0.22 |
clpC1 | 4038303 | p.Thr801Asn | missense_variant | 0.11 |
clpC1 | 4039645 | p.His354Asp | missense_variant | 0.12 |
clpC1 | 4040144 | c.561G>C | synonymous_variant | 0.18 |
clpC1 | 4040180 | c.525C>T | synonymous_variant | 0.12 |
panD | 4044156 | c.126A>G | synonymous_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.27 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.38 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.38 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.44 |
embB | 4246608 | p.Ile32Asn | missense_variant | 0.12 |
embB | 4249537 | c.3024A>G | synonymous_variant | 0.11 |
ubiA | 4269339 | c.494delG | frameshift_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |