Run ID: ERR2229596
Sample name:
Date: 18-08-2022 10:57:17
Number of reads: 499521
Percentage reads mapped: 99.17
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7498 | p.Pro66Leu | missense_variant | 0.15 |
gyrA | 8260 | p.Arg320His | missense_variant | 0.18 |
gyrA | 8759 | c.1458C>T | synonymous_variant | 0.17 |
rpoB | 761828 | p.His674Gln | missense_variant | 0.17 |
rplC | 801217 | p.Ala137Thr | missense_variant | 0.14 |
rplC | 801264 | c.456C>A | synonymous_variant | 0.15 |
fbiC | 1304070 | c.1140C>G | synonymous_variant | 0.17 |
embR | 1416282 | p.Arg356* | stop_gained | 0.15 |
embR | 1417205 | p.Arg48Lys | missense_variant | 0.15 |
atpE | 1460927 | c.-118C>G | upstream_gene_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474157 | n.500G>T | non_coding_transcript_exon_variant | 0.13 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.2 |
fabG1 | 1673416 | c.-24G>A | upstream_gene_variant | 0.12 |
rpsA | 1833386 | c.-156A>G | upstream_gene_variant | 0.18 |
rpsA | 1833558 | p.Val6Asp | missense_variant | 0.15 |
rpsA | 1833569 | p.Gln10Lys | missense_variant | 0.14 |
rpsA | 1834557 | p.Ala339Asp | missense_variant | 0.18 |
ahpC | 2726036 | c.-157C>A | upstream_gene_variant | 0.2 |
ahpC | 2726053 | c.-140C>A | upstream_gene_variant | 0.15 |
fbiA | 3640837 | p.Pro99Ser | missense_variant | 0.14 |
alr | 3841539 | c.-119C>T | upstream_gene_variant | 0.12 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.43 |
alr | 3841565 | c.-145G>C | upstream_gene_variant | 0.12 |
alr | 3841612 | c.-193_-192insC | upstream_gene_variant | 0.17 |
embC | 4240801 | c.939C>T | synonymous_variant | 0.13 |
embC | 4240803 | p.Tyr314Phe | missense_variant | 0.13 |
embC | 4242560 | c.2701delG | frameshift_variant | 0.2 |
embA | 4243672 | p.Gly147Val | missense_variant | 0.18 |
embA | 4243959 | c.727_728insA | frameshift_variant | 0.17 |
embA | 4245384 | p.Thr718Pro | missense_variant | 0.14 |
gid | 4407531 | c.672G>A | synonymous_variant | 0.2 |