TB-Profiler result

Run: ERR2229596

Summary

Run ID: ERR2229596

Sample name:

Date: 18-08-2022 10:57:17

Number of reads: 499521

Percentage reads mapped: 99.17

Strain: lineage4.8

Drug-resistance: Sensitive


Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7498 p.Pro66Leu missense_variant 0.15
gyrA 8260 p.Arg320His missense_variant 0.18
gyrA 8759 c.1458C>T synonymous_variant 0.17
rpoB 761828 p.His674Gln missense_variant 0.17
rplC 801217 p.Ala137Thr missense_variant 0.14
rplC 801264 c.456C>A synonymous_variant 0.15
fbiC 1304070 c.1140C>G synonymous_variant 0.17
embR 1416282 p.Arg356* stop_gained 0.15
embR 1417205 p.Arg48Lys missense_variant 0.15
atpE 1460927 c.-118C>G upstream_gene_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474157 n.500G>T non_coding_transcript_exon_variant 0.13
fabG1 1673380 c.-60C>G upstream_gene_variant 0.2
fabG1 1673416 c.-24G>A upstream_gene_variant 0.12
rpsA 1833386 c.-156A>G upstream_gene_variant 0.18
rpsA 1833558 p.Val6Asp missense_variant 0.15
rpsA 1833569 p.Gln10Lys missense_variant 0.14
rpsA 1834557 p.Ala339Asp missense_variant 0.18
ahpC 2726036 c.-157C>A upstream_gene_variant 0.2
ahpC 2726053 c.-140C>A upstream_gene_variant 0.15
fbiA 3640837 p.Pro99Ser missense_variant 0.14
alr 3841539 c.-119C>T upstream_gene_variant 0.12
alr 3841546 c.-126C>A upstream_gene_variant 0.43
alr 3841565 c.-145G>C upstream_gene_variant 0.12
alr 3841612 c.-193_-192insC upstream_gene_variant 0.17
embC 4240801 c.939C>T synonymous_variant 0.13
embC 4240803 p.Tyr314Phe missense_variant 0.13
embC 4242560 c.2701delG frameshift_variant 0.2
embA 4243672 p.Gly147Val missense_variant 0.18
embA 4243959 c.727_728insA frameshift_variant 0.17
embA 4245384 p.Thr718Pro missense_variant 0.14
gid 4407531 c.672G>A synonymous_variant 0.2