TB-Profiler result

Run: ERR2229610

Summary

Run ID: ERR2229610

Sample name:

Date: 31-03-2023 17:21:35

Number of reads: 974987

Percentage reads mapped: 99.2

Strain: lineage4.8

Drug-resistance: Sensitive


Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6235 c.996C>A synonymous_variant 0.15
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7918 p.Glu206Gly missense_variant 0.13
gyrA 8768 p.Arg489Ser missense_variant 0.12
fgd1 491224 p.Val148Leu missense_variant 0.18
mshA 575880 p.His178Arg missense_variant 0.11
mshA 576108 p.Ala254Gly missense_variant 0.38
rpoB 762444 p.Ala880Thr missense_variant 0.17
rpoB 762640 p.Gly945Glu missense_variant 0.14
rpoB 763060 p.Ile1085Asn missense_variant 0.12
rpoC 764576 p.Ser403Pro missense_variant 0.2
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776018 c.2463G>C synonymous_variant 0.12
mmpL5 776021 c.2460G>C synonymous_variant 0.11
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1303571 p.Met214Thr missense_variant 0.11
fbiC 1303747 p.Thr273Ala missense_variant 1.0
fbiC 1303944 c.1014G>C synonymous_variant 0.2
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1473926 n.269G>T non_coding_transcript_exon_variant 0.11
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
inhA 1674362 p.Leu54Pro missense_variant 0.18
rpsA 1833805 c.264C>T synonymous_variant 0.13
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918072 p.Ala45Thr missense_variant 0.13
PPE35 2168728 p.Gly629Arg missense_variant 1.0
PPE35 2169602 c.1011C>A synonymous_variant 0.19
PPE35 2169902 c.711G>C synonymous_variant 0.14
PPE35 2170048 p.Leu189Val missense_variant 0.58
PPE35 2170053 p.Thr187Ser missense_variant 0.62
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
eis 2714139 c.1194C>A synonymous_variant 0.17
eis 2714254 p.Tyr360Cys missense_variant 0.11
folC 2746986 p.Leu205Ile missense_variant 0.13
thyA 3073926 c.546G>A synonymous_variant 0.12
ald 3087282 p.Gly155Cys missense_variant 0.12
fbiD 3339703 p.Thr196Ser missense_variant 0.12
whiB7 3568428 c.252A>G synonymous_variant 0.19
Rv3236c 3612145 c.972G>T synonymous_variant 0.13
Rv3236c 3612628 c.489G>C synonymous_variant 0.2
Rv3236c 3612730 c.387C>A synonymous_variant 0.14
Rv3236c 3612780 c.337T>C synonymous_variant 0.14
Rv3236c 3613004 p.Leu38Ser missense_variant 0.15
fbiA 3641461 p.Pro307Ala missense_variant 0.1
alr 3841546 c.-126C>A upstream_gene_variant 0.16
embC 4240967 p.His369Asn missense_variant 0.12
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242673 c.-560G>T upstream_gene_variant 0.33
embA 4244284 p.Pro351Gln missense_variant 0.2
embB 4246548 p.Pro12Gln missense_variant 0.25
embB 4246555 c.42G>C synonymous_variant 0.27
embB 4246556 p.Ala15Pro missense_variant 0.27
embB 4249453 c.2940G>T synonymous_variant 0.13
aftB 4268554 p.Met95Val missense_variant 0.33
ubiA 4269303 c.530delT frameshift_variant 0.15
ubiA 4269525 p.Tyr103* stop_gained 0.12
ethA 4326121 c.1353G>T synonymous_variant 0.12
ethA 4326181 p.Phe431Leu missense_variant 0.17
ethA 4327623 c.-150A>G upstream_gene_variant 0.18
ethR 4327867 p.Ile107Val missense_variant 0.13
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0