Run ID: ERR2229610
Sample name:
Date: 31-03-2023 17:21:35
Number of reads: 974987
Percentage reads mapped: 99.2
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6235 | c.996C>A | synonymous_variant | 0.15 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7918 | p.Glu206Gly | missense_variant | 0.13 |
gyrA | 8768 | p.Arg489Ser | missense_variant | 0.12 |
fgd1 | 491224 | p.Val148Leu | missense_variant | 0.18 |
mshA | 575880 | p.His178Arg | missense_variant | 0.11 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.38 |
rpoB | 762444 | p.Ala880Thr | missense_variant | 0.17 |
rpoB | 762640 | p.Gly945Glu | missense_variant | 0.14 |
rpoB | 763060 | p.Ile1085Asn | missense_variant | 0.12 |
rpoC | 764576 | p.Ser403Pro | missense_variant | 0.2 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776018 | c.2463G>C | synonymous_variant | 0.12 |
mmpL5 | 776021 | c.2460G>C | synonymous_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303571 | p.Met214Thr | missense_variant | 0.11 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1303944 | c.1014G>C | synonymous_variant | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473926 | n.269G>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
inhA | 1674362 | p.Leu54Pro | missense_variant | 0.18 |
rpsA | 1833805 | c.264C>T | synonymous_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918072 | p.Ala45Thr | missense_variant | 0.13 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169602 | c.1011C>A | synonymous_variant | 0.19 |
PPE35 | 2169902 | c.711G>C | synonymous_variant | 0.14 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.58 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.62 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714139 | c.1194C>A | synonymous_variant | 0.17 |
eis | 2714254 | p.Tyr360Cys | missense_variant | 0.11 |
folC | 2746986 | p.Leu205Ile | missense_variant | 0.13 |
thyA | 3073926 | c.546G>A | synonymous_variant | 0.12 |
ald | 3087282 | p.Gly155Cys | missense_variant | 0.12 |
fbiD | 3339703 | p.Thr196Ser | missense_variant | 0.12 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.19 |
Rv3236c | 3612145 | c.972G>T | synonymous_variant | 0.13 |
Rv3236c | 3612628 | c.489G>C | synonymous_variant | 0.2 |
Rv3236c | 3612730 | c.387C>A | synonymous_variant | 0.14 |
Rv3236c | 3612780 | c.337T>C | synonymous_variant | 0.14 |
Rv3236c | 3613004 | p.Leu38Ser | missense_variant | 0.15 |
fbiA | 3641461 | p.Pro307Ala | missense_variant | 0.1 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.16 |
embC | 4240967 | p.His369Asn | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242673 | c.-560G>T | upstream_gene_variant | 0.33 |
embA | 4244284 | p.Pro351Gln | missense_variant | 0.2 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.25 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.27 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.27 |
embB | 4249453 | c.2940G>T | synonymous_variant | 0.13 |
aftB | 4268554 | p.Met95Val | missense_variant | 0.33 |
ubiA | 4269303 | c.530delT | frameshift_variant | 0.15 |
ubiA | 4269525 | p.Tyr103* | stop_gained | 0.12 |
ethA | 4326121 | c.1353G>T | synonymous_variant | 0.12 |
ethA | 4326181 | p.Phe431Leu | missense_variant | 0.17 |
ethA | 4327623 | c.-150A>G | upstream_gene_variant | 0.18 |
ethR | 4327867 | p.Ile107Val | missense_variant | 0.13 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |