Run ID: ERR2229611
Sample name:
Date: 18-08-2022 10:57:26
Number of reads: 467294
Percentage reads mapped: 99.02
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7583 | p.Asp94Glu | missense_variant | 0.12 |
gyrA | 8995 | p.Asp565Val | missense_variant | 0.13 |
rpoB | 761895 | p.Ala697Ser | missense_variant | 0.17 |
rpoC | 763115 | c.-255T>A | upstream_gene_variant | 0.18 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472958 | n.1113A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673322 | c.-118C>A | upstream_gene_variant | 0.2 |
fabG1 | 1673346 | c.-94C>G | upstream_gene_variant | 0.24 |
fabG1 | 1673349 | c.-91G>C | upstream_gene_variant | 0.36 |
fabG1 | 1673357 | c.-83G>A | upstream_gene_variant | 0.13 |
fabG1 | 1673359 | c.-81T>C | upstream_gene_variant | 0.13 |
fabG1 | 1673361 | c.-79C>G | upstream_gene_variant | 0.13 |
fabG1 | 1673378 | c.-62C>A | upstream_gene_variant | 0.14 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.64 |
eis | 2715330 | c.3G>T | synonymous_variant | 0.2 |
ald | 3087842 | c.1023A>G | synonymous_variant | 0.17 |
fbiB | 3642709 | p.Gly392Val | missense_variant | 0.18 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.28 |
embB | 4248203 | p.Pro564Ala | missense_variant | 0.15 |
embB | 4248390 | p.Met626Thr | missense_variant | 0.13 |
ethA | 4326151 | c.1323C>A | synonymous_variant | 0.12 |
ethR | 4326961 | c.-588G>C | upstream_gene_variant | 0.2 |
ethR | 4326964 | c.-585G>A | upstream_gene_variant | 0.2 |
ethR | 4326970 | c.-579G>T | upstream_gene_variant | 0.33 |
ethR | 4328111 | p.Ala188Val | missense_variant | 0.17 |