Run ID: ERR2229641
Sample name:
Date: 31-03-2023 17:23:10
Number of reads: 787458
Percentage reads mapped: 99.27
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 575261 | c.-87T>C | upstream_gene_variant | 0.13 |
mshA | 576586 | c.1239G>T | synonymous_variant | 0.15 |
rpoB | 759853 | p.Ser16Ile | missense_variant | 0.11 |
rpoB | 760734 | p.Val310Phe | missense_variant | 0.29 |
rpoB | 760770 | p.Ile322Val | missense_variant | 0.18 |
rpoB | 760908 | p.Gly368Ser | missense_variant | 0.29 |
rpoB | 760935 | p.Glu377Lys | missense_variant | 0.22 |
rpoB | 761152 | p.Leu449Gln | missense_variant | 0.14 |
rpoB | 761463 | p.Val553Met | missense_variant | 0.12 |
rpoB | 762218 | c.2412T>C | synonymous_variant | 0.11 |
rpoB | 763014 | p.Met1070Leu | missense_variant | 0.12 |
rpoC | 763548 | p.Cys60Tyr | missense_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776238 | p.Gly748Asp | missense_variant | 0.18 |
mmpL5 | 776404 | p.Pro693Thr | missense_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781641 | p.Pro28Ser | missense_variant | 0.12 |
rplC | 801118 | p.Glu104Arg | missense_variant | 0.18 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
Rv1258c | 1406751 | p.Gly197Asp | missense_variant | 0.17 |
Rv1258c | 1406861 | c.480C>A | synonymous_variant | 0.12 |
atpE | 1460852 | c.-193C>A | upstream_gene_variant | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.17 |
rpsA | 1834319 | p.Val260Ile | missense_variant | 0.2 |
rpsA | 1834560 | p.Val340Asp | missense_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102185 | c.858C>T | synonymous_variant | 0.13 |
katG | 2155412 | p.Gly234Trp | missense_variant | 0.12 |
PPE35 | 2167745 | p.Thr956Arg | missense_variant | 0.12 |
PPE35 | 2168114 | c.2499T>C | synonymous_variant | 0.18 |
PPE35 | 2168373 | p.Pro747Gln | missense_variant | 0.12 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169602 | c.1011C>A | synonymous_variant | 0.14 |
PPE35 | 2169902 | p.Leu237Phe | missense_variant | 0.17 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.5 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.47 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519045 | p.His311Asn | missense_variant | 0.14 |
eis | 2714326 | p.Gly336Ala | missense_variant | 0.11 |
eis | 2714542 | p.Arg264Leu | missense_variant | 0.12 |
pepQ | 2860265 | p.Ala52Ser | missense_variant | 0.17 |
ribD | 2987440 | p.Thr201Lys | missense_variant | 0.12 |
whiB7 | 3568528 | p.Gln51Arg | missense_variant | 0.18 |
fbiB | 3640863 | c.-672C>T | upstream_gene_variant | 0.12 |
fbiB | 3642318 | p.Ser262Pro | missense_variant | 0.12 |
alr | 3840547 | p.Gly292Ser | missense_variant | 0.14 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.26 |
clpC1 | 4038683 | c.2022T>C | synonymous_variant | 0.11 |
clpC1 | 4039366 | p.Ala447Ser | missense_variant | 0.15 |
embC | 4240868 | p.His336Tyr | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.11 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.18 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.18 |
embB | 4247291 | p.Ser260Thr | missense_variant | 0.15 |
embB | 4248477 | p.Pro655Arg | missense_variant | 0.11 |
embB | 4249398 | p.Ala962Val | missense_variant | 0.12 |
aftB | 4267217 | c.1620C>T | synonymous_variant | 0.12 |
ubiA | 4269162 | p.Leu224Phe | missense_variant | 0.17 |
ethA | 4327427 | p.Gly16Ala | missense_variant | 0.11 |
ethA | 4327647 | c.-174G>A | upstream_gene_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |