TB-Profiler result

Run: ERR2229757
Summary

Run ID: ERR2229757

Sample name:

Date: 31-03-2023 17:33:06

Number of reads: 52602

Percentage reads mapped: 98.37

Strain: lineage4

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
fgd1 490696 c.-87T>A upstream_gene_variant 1.0
rpoC 766750 c.3381C>T synonymous_variant 1.0
mmpL5 775952 c.2529G>C synonymous_variant 0.67
mmpL5 775955 p.Ile842Leu missense_variant 0.67
mmpL5 775964 c.2517G>C synonymous_variant 0.67
mmpS5 779550 c.-645A>G upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
inhA 1673946 c.-256C>A upstream_gene_variant 0.67
PPE35 2168728 p.Gly629Arg missense_variant 1.0
clpC1 4040744 c.-40A>T upstream_gene_variant 0.4
embC 4240004 p.Pro48Thr missense_variant 1.0
embC 4242593 p.His911Tyr missense_variant 0.67
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4246163 c.-351G>T upstream_gene_variant 1.0
ethA 4327221 p.Val85Ile missense_variant 0.5