Run ID: ERR228219
Sample name:
Date: 31-03-2023 17:49:08
Number of reads: 3128034
Percentage reads mapped: 99.68
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491061 | p.Met93Ile | missense_variant | 0.95 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472654 | n.809G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474018 | n.361G>C | non_coding_transcript_exon_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |