Run ID: ERR2503420
Sample name:
Date: 31-03-2023 18:27:05
Number of reads: 1304081
Percentage reads mapped: 99.58
Strain: lineage4
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9016 | p.Thr572Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416730 | c.578_617delAGCTCGAGGCTCTGACATTCGAACACCCCTACCGGGAGCC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475361 | n.1704G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475696 | n.2039T>A | non_coding_transcript_exon_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169223 | p.Ser464Pro | missense_variant | 1.0 |
Rv1979c | 2221792 | p.Val458Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714888 | p.Phe149Val | missense_variant | 1.0 |
ahpC | 2726152 | c.-41C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3840225 | p.Thr399Ile | missense_variant | 1.0 |
rpoA | 3878567 | c.-60C>G | upstream_gene_variant | 0.5 |
embC | 4241151 | p.Ile430Ser | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249106 | c.2593C>T | synonymous_variant | 1.0 |
whiB6 | 4338593 | c.-72C>G | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
embR | 1416730 | c.577_617delNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG | frameshift_variant | 1.0 |