Run ID: ERR2510759
Sample name:
Date: 20-10-2023 06:29:46
Number of reads: 1974029
Percentage reads mapped: 98.08
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rpoB | 761967 | p.Glu721Lys | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.29 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169122 | c.1491C>G | synonymous_variant | 1.0 |
PPE35 | 2169125 | p.Val496Ile | missense_variant | 1.0 |
PPE35 | 2169131 | c.1482C>T | synonymous_variant | 1.0 |
PPE35 | 2169134 | c.1479G>A | synonymous_variant | 1.0 |
PPE35 | 2169141 | p.Thr491Met | missense_variant | 1.0 |
PPE35 | 2169144 | p.Val490Ala | missense_variant | 1.0 |
PPE35 | 2169149 | c.1464G>A | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289972 | c.-731T>G | upstream_gene_variant | 1.0 |
kasA | 2518169 | p.Val19Ile | missense_variant | 1.0 |
ald | 3087095 | c.276C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |