Run ID: ERR257882
Sample name:
Date: 31-03-2023 22:21:50
Number of reads: 474689
Percentage reads mapped: 85.02
Strain: lineage4
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6455 | p.Val406Phe | missense_variant | 0.13 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620414 | p.His175Pro | missense_variant | 0.22 |
rpoC | 764643 | p.Ser425Leu | missense_variant | 0.22 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776491 | p.Asp664Tyr | missense_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781614 | p.Val19Phe | missense_variant | 0.12 |
fbiC | 1303651 | p.Arg241Trp | missense_variant | 0.13 |
Rv1258c | 1407316 | p.Ala9Thr | missense_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474344 | n.687G>T | non_coding_transcript_exon_variant | 0.33 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102124 | p.Pro307Thr | missense_variant | 0.11 |
katG | 2154297 | c.1815G>T | synonymous_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
Rv2752c | 3065824 | p.Pro123Leu | missense_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339068 | c.-50G>A | upstream_gene_variant | 0.22 |
Rv3083 | 3449673 | p.Tyr390* | stop_gained | 0.2 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612684 | p.Asn145Tyr | missense_variant | 0.25 |
alr | 3840300 | p.Pro374His | missense_variant | 0.18 |
alr | 3841102 | p.Ala107Thr | missense_variant | 0.29 |
rpoA | 3878056 | p.Gln151Arg | missense_variant | 0.17 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
panD | 4044255 | p.Lys9Asn | missense_variant | 0.17 |
embC | 4242603 | p.Ser914Leu | missense_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.22 |
embA | 4245805 | p.Gln858Arg | missense_variant | 1.0 |
aftB | 4267102 | p.Arg579Cys | missense_variant | 0.13 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |