Run ID: ERR2652939
Sample name:
Date: 31-03-2023 22:24:38
Number of reads: 1153891
Percentage reads mapped: 99.75
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rpsL | 781478 | c.-82C>T | upstream_gene_variant | 0.15 |
embR | 1416583 | c.765G>C | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
pncA | 2288980 | p.Ser88Pro | missense_variant | 1.0 |
fprA | 3473971 | c.-36T>C | upstream_gene_variant | 0.1 |
embC | 4240860 | p.Leu333Arg | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |