TB-Profiler result

Run: ERR2652947
Summary

Run ID: ERR2652947

Sample name:

Date: 31-03-2023 22:24:48

Number of reads: 1239030

Percentage reads mapped: 99.77

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
rpoC 767290 c.3921G>T synonymous_variant 0.11
fbiC 1303643 p.Pro238Leu missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2170504 p.Glu37Lys missense_variant 0.12
whiB7 3568561 p.Lys40Met missense_variant 0.11
embC 4240860 p.Leu333Arg missense_variant 1.0
embB 4246627 p.Phe38Leu missense_variant 0.13
whiB6 4338595 c.-75delG upstream_gene_variant 1.0