TB-Profiler result

Run: ERR2652968
Summary

Run ID: ERR2652968

Sample name:

Date: 31-03-2023 22:25:26

Number of reads: 1062586

Percentage reads mapped: 99.74

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2169897 p.Ser239Tyr missense_variant 0.39
PPE35 2170059 p.Val185Ala missense_variant 0.1
folC 2746459 c.1140C>T synonymous_variant 0.13
folC 2746506 p.Thr365Ala missense_variant 0.13
embC 4240860 p.Leu333Arg missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0