Run ID: ERR2660487
Sample name:
Date: 31-03-2023 22:52:00
Number of reads: 2696632
Percentage reads mapped: 99.8
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 575761 | c.414C>T | synonymous_variant | 0.99 |
rpoB | 759814 | p.Asp3Gly | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781502 | c.-58G>T | upstream_gene_variant | 0.99 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473132 | n.1287T>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473149 | n.1304G>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1473699 | n.42A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475586 | n.1929C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475594 | n.1937G>T | non_coding_transcript_exon_variant | 0.25 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168682 | p.Phe644Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |