Run ID: ERR3275946
Sample name:
Date: 11-08-2022 16:27:12
Number of reads: 2943594
Percentage reads mapped: 99.97
Strain: lineage4.5
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.13 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.09 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2156456 | c.-345T>C | upstream_gene_variant | 1.0 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290077 | c.-836G>T | upstream_gene_variant | 1.0 |
Rv3083 | 3448932 | c.430_447delAACTACGACGCGGGTTAT | conservative_inframe_deletion | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474997 | p.Gly331Arg | missense_variant | 1.0 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 1.0 |
clpC1 | 4039007 | c.1698G>C | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |