Run ID: ERR3439285
Sample name:
Date: 01-04-2023 02:01:22
Number of reads: 35172
Percentage reads mapped: 2.82
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 778178 | c.-812G>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473000 | n.1155G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473010 | n.1165C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475716 | n.2059A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475769 | n.2112T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476214 | n.2557G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476229 | n.2572C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476252 | n.2595T>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476297 | n.2640C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476322 | n.2665C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476359 | n.2702C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476368 | n.2711T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476381 | n.2724G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1833838 | c.297G>A | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
kasA | 2519093 | p.Arg327Ser | missense_variant | 0.67 |
eis | 2715125 | p.Thr70Ala | missense_variant | 1.0 |
Rv2752c | 3065484 | c.708G>A | synonymous_variant | 0.67 |
embA | 4243758 | p.Asp176Tyr | missense_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4247260 | c.747C>A | synonymous_variant | 1.0 |