TB-Profiler result

Run: ERR3439509

Summary

Run ID: ERR3439509

Sample name:

Date: 01-04-2023 02:09:38

Number of reads: 34772

Percentage reads mapped: 1.38

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.98
lineage4.9 Euro-American (H37Rv-like) T1 None 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 8285 c.984C>T synonymous_variant 1.0
rpoC 764105 p.Asp246Asn missense_variant 0.5
ndh 2102193 p.Arg284Trp missense_variant 1.0
PPE35 2168319 p.Thr765Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3475042 p.Gly346Ser missense_variant 1.0
embC 4242607 p.Met915Ile missense_variant 0.5
embA 4242643 c.-590C>T upstream_gene_variant 1.0