TB-Profiler result

Run: ERR3468693

Summary

Run ID: ERR3468693

Sample name:

Date: 01-04-2023 02:21:24

Number of reads: 23026

Percentage reads mapped: 2.85

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 8285 c.984C>T synonymous_variant 1.0
ccsA 620450 p.Leu187Pro missense_variant 1.0
rpoC 764575 c.1206T>G synonymous_variant 1.0
rpoC 764581 c.1212T>C synonymous_variant 1.0
rpoC 764582 p.Leu405Met missense_variant 1.0
rpoC 764605 c.1236G>C synonymous_variant 1.0
rpoC 764611 c.1242G>T synonymous_variant 1.0
rpoC 764632 c.1263T>C synonymous_variant 1.0
rpoC 764641 c.1272C>T synonymous_variant 1.0
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764663 p.Val432Thr missense_variant 1.0
rpoC 764668 c.1299C>T synonymous_variant 1.0
rpoC 764672 p.Gln435Glu missense_variant 1.0
rpoC 764686 c.1317C>T synonymous_variant 1.0
rpoC 764695 c.1326T>C synonymous_variant 1.0
rpoC 764701 c.1332C>G synonymous_variant 1.0
rpoC 764705 p.Leu446Lys missense_variant 1.0
rpoC 764716 c.1347G>C synonymous_variant 1.0
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
eis 2715125 p.Thr70Ala missense_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0