Run ID: ERR3470563
Sample name:
Date: 01-04-2023 02:25:19
Number of reads: 5285084
Percentage reads mapped: 99.76
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5389 | c.150C>A | synonymous_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.27 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918476 | c.537A>G | synonymous_variant | 0.99 |
rpoA | 3878630 | c.-123G>C | upstream_gene_variant | 0.14 |
rpoA | 3878637 | c.-130G>C | upstream_gene_variant | 0.2 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.27 |
whiB6 | 4338595 | c.-75_-74insA | upstream_gene_variant | 0.99 |
whiB6 | 4338598 | c.-78delA | upstream_gene_variant | 1.0 |