TB-Profiler result

Run: ERR3797071
Summary

Run ID: ERR3797071

Sample name:

Date: 01-04-2023 03:04:29

Number of reads: 24111

Percentage reads mapped: 17.43

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
embB 4247663 p.Tyr384Asn missense_variant 1.0 ethambutol
embB 4247676 p.Ala388Gly missense_variant 1.0 ethambutol
embB 4247708 p.Asn399Asp missense_variant 1.0 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6292 c.1053G>C synonymous_variant 1.0
gyrA 6304 c.-998C>G upstream_gene_variant 1.0
gyrA 6307 c.-995T>G upstream_gene_variant 1.0
gyrA 6319 c.-983G>C upstream_gene_variant 1.0
gyrA 6403 c.-899T>C upstream_gene_variant 1.0
gyrA 6415 c.-887G>C upstream_gene_variant 1.0
gyrA 6418 c.-884C>G upstream_gene_variant 1.0
gyrA 6427 c.-875T>C upstream_gene_variant 1.0
gyrA 6598 c.-704C>G upstream_gene_variant 1.0
gyrA 6610 c.-692C>G upstream_gene_variant 1.0
gyrA 6613 c.-689A>G upstream_gene_variant 1.0
gyrA 6616 c.-686A>G upstream_gene_variant 1.0
gyrA 6622 c.-680C>T upstream_gene_variant 1.0
gyrA 6634 c.-668T>C upstream_gene_variant 1.0
gyrA 6637 c.-665T>G upstream_gene_variant 1.0
gyrA 6640 c.-662A>G upstream_gene_variant 1.0
gyrA 6649 c.-653T>C upstream_gene_variant 1.0
gyrA 6655 c.-647T>C upstream_gene_variant 1.0
gyrA 6670 c.-632G>C upstream_gene_variant 1.0
gyrA 6673 c.-629A>C upstream_gene_variant 1.0
gyrA 6676 c.-626T>G upstream_gene_variant 1.0
gyrA 6700 c.-602T>C upstream_gene_variant 1.0
gyrA 6703 c.-599G>C upstream_gene_variant 1.0
gyrA 6709 c.-593A>G upstream_gene_variant 1.0
gyrA 6712 c.-590G>C upstream_gene_variant 1.0
gyrA 6728 c.-574_-572delCTAinsTTG upstream_gene_variant 1.0
gyrA 6742 c.-560A>G upstream_gene_variant 1.0
gyrA 6745 c.-557T>G upstream_gene_variant 1.0
gyrA 6751 c.-551G>C upstream_gene_variant 1.0
gyrA 6760 c.-542G>C upstream_gene_variant 1.0
gyrA 6763 c.-539G>C upstream_gene_variant 1.0
gyrA 6775 c.-527G>C upstream_gene_variant 1.0
gyrA 6793 c.-509T>C upstream_gene_variant 1.0
gyrA 8276 c.975G>A synonymous_variant 1.0
gyrA 8283 p.Ile328Leu missense_variant 1.0
gyrA 8288 c.987T>C synonymous_variant 1.0
gyrA 8294 c.993T>C synonymous_variant 1.0
gyrA 8324 c.1023T>C synonymous_variant 1.0
gyrA 8330 c.1029C>G synonymous_variant 1.0
gyrA 8337 c.1036_1038delCTAinsTTG synonymous_variant 1.0
gyrA 8342 c.1041G>C synonymous_variant 1.0
gyrA 8642 c.1341A>G synonymous_variant 1.0
gyrA 8672 c.1371A>G synonymous_variant 1.0
gyrA 8678 c.1377G>A synonymous_variant 1.0
gyrA 8693 c.1392T>C synonymous_variant 1.0
gyrA 8696 c.1395G>C synonymous_variant 1.0
gyrA 8699 c.1398A>G synonymous_variant 1.0
gyrA 8708 c.1407G>C synonymous_variant 1.0
gyrA 8711 c.1410A>C synonymous_variant 1.0
gyrA 8714 c.1413A>G synonymous_variant 1.0
gyrA 8729 c.1428T>C synonymous_variant 1.0
gyrA 8731 p.Gly477Ala missense_variant 1.0
gyrA 8740 p.Arg480His missense_variant 1.0
gyrA 8747 c.1446A>G synonymous_variant 1.0
fgd1 491144 p.Ala121Asp missense_variant 1.0
fgd1 491151 c.369G>A synonymous_variant 1.0
fgd1 491173 c.391C>A synonymous_variant 1.0
fgd1 491181 c.399T>C synonymous_variant 1.0
fgd1 491184 c.402A>G synonymous_variant 1.0
fgd1 491191 p.Gly137Arg missense_variant 1.0
fgd1 491194 c.412_414delCTAinsTTG synonymous_variant 1.0
mshA 575659 c.312A>G synonymous_variant 1.0
mshA 575662 c.315C>G synonymous_variant 1.0
mshA 575665 c.318G>A synonymous_variant 1.0
mshA 575674 c.327G>C synonymous_variant 1.0
mshA 575713 c.366G>A synonymous_variant 1.0
mshA 575719 c.372C>T synonymous_variant 1.0
mshA 575734 c.387T>G synonymous_variant 1.0
mshA 575737 c.390T>C synonymous_variant 1.0
mshA 575746 c.399C>G synonymous_variant 1.0
mshA 575752 c.405G>C synonymous_variant 1.0
mshA 575755 c.408G>A synonymous_variant 1.0
mshA 575756 c.409C>T synonymous_variant 1.0
mshA 575770 c.423G>A synonymous_variant 1.0
mshA 575771 p.Val142Ser missense_variant 1.0
mshA 575779 c.432A>G synonymous_variant 1.0
mshA 575782 c.435G>C synonymous_variant 1.0
mshA 575809 c.462C>T synonymous_variant 1.0
mshA 575821 c.474G>C synonymous_variant 1.0
mshA 575824 c.477T>G synonymous_variant 1.0
mshA 575830 c.483C>G synonymous_variant 1.0
mshA 575833 c.486C>G synonymous_variant 1.0
mshA 575845 c.498C>T synonymous_variant 1.0
mshA 575884 c.537G>C synonymous_variant 1.0
mshA 575887 c.540G>C synonymous_variant 1.0
mshA 575893 c.546C>G synonymous_variant 1.0
mshA 575896 c.549G>C synonymous_variant 1.0
mshA 575908 c.561A>G synonymous_variant 1.0
mshA 575917 p.Asp190Glu missense_variant 1.0
mshA 575920 c.573C>G synonymous_variant 1.0
mshA 575924 p.Gly193Ser missense_variant 1.0
mshA 575944 c.597T>C synonymous_variant 1.0
mshA 575950 c.603C>G synonymous_variant 1.0
mshA 575965 c.618C>G synonymous_variant 1.0
ccsA 620310 c.420C>T synonymous_variant 1.0
ccsA 620317 p.Val143Leu missense_variant 1.0
ccsA 620340 c.450C>G synonymous_variant 1.0
ccsA 620346 c.456C>G synonymous_variant 1.0
rpoB 760139 c.333A>G synonymous_variant 1.0
rpoB 760142 c.336C>G synonymous_variant 1.0
rpoB 760181 c.375T>C synonymous_variant 1.0
rpoB 760184 c.378A>G synonymous_variant 1.0
rpoB 760196 c.390C>G synonymous_variant 1.0
rpoB 760283 c.477G>C synonymous_variant 1.0
rpoB 760298 c.492G>C synonymous_variant 0.67
rpoB 760307 c.501T>C synonymous_variant 1.0
rpoB 760310 c.504G>C synonymous_variant 1.0
rpoB 760328 c.522G>C synonymous_variant 1.0
rpoB 760331 c.525G>C synonymous_variant 1.0
rpoB 760340 c.534G>T synonymous_variant 1.0
rpoB 760361 c.555T>C synonymous_variant 1.0
rpoB 760370 c.564C>G synonymous_variant 1.0
rpoB 760376 p.Asp190Glu missense_variant 1.0
rpoB 760380 p.Thr192Leu missense_variant 1.0
rpoB 760406 c.600G>C synonymous_variant 1.0
rpoB 760412 c.606C>G synonymous_variant 1.0
rpoB 760424 c.618C>G synonymous_variant 1.0
rpoB 760430 c.624T>C synonymous_variant 1.0
rpoB 760547 c.741G>C synonymous_variant 0.67
rpoB 760563 p.Arg253Met missense_variant 0.67
rpoB 760591 p.Val262Ala missense_variant 1.0
rpoB 760611 c.805T>C synonymous_variant 1.0
rpoB 760634 c.828T>C synonymous_variant 1.0
rpoB 760869 p.Val355Ile missense_variant 0.67
rpoB 760886 c.1080A>G synonymous_variant 0.67
rpoB 760925 c.1119T>C synonymous_variant 1.0
rpoB 760928 c.1122G>C synonymous_variant 1.0
rpoB 760931 c.1125C>G synonymous_variant 1.0
rpoB 760934 c.1128C>T synonymous_variant 1.0
rpoB 760946 c.1140A>G synonymous_variant 1.0
rpoB 760982 c.1176G>C synonymous_variant 1.0
rpoB 761537 c.1731C>G synonymous_variant 1.0
rpoB 761570 c.1764T>C synonymous_variant 1.0
rpoB 761573 c.1767C>G synonymous_variant 1.0
rpoB 761579 c.1773G>C synonymous_variant 1.0
rpoB 761588 c.1782C>T synonymous_variant 1.0
rpoB 761606 c.1800C>G synonymous_variant 1.0
rpoB 761612 c.1806G>C synonymous_variant 1.0
rpoB 761615 c.1809A>C synonymous_variant 1.0
rpoB 761636 c.1830G>T synonymous_variant 1.0
rpoB 761645 c.1839C>G synonymous_variant 0.75
rpoB 761648 c.1842T>C synonymous_variant 0.75
rpoB 761657 c.1851C>G synonymous_variant 0.67
rpoB 761675 c.1869G>C synonymous_variant 0.67
rpoB 761873 c.2067A>C synonymous_variant 0.67
rpoB 761885 c.2079T>C synonymous_variant 0.67
rpoB 761906 c.2100C>G synonymous_variant 1.0
rpoB 761909 c.2103T>C synonymous_variant 1.0
rpoB 761912 c.2106T>C synonymous_variant 1.0
rpoB 761915 p.Asp703Glu missense_variant 1.0
rpoB 761916 p.Asp704Asn missense_variant 1.0
rpoB 761948 c.2142G>C synonymous_variant 1.0
rpoB 761954 c.2148C>G synonymous_variant 1.0
rpoB 762008 c.2202C>T synonymous_variant 1.0
rpoB 762014 c.2208C>T synonymous_variant 0.67
rpoB 762017 c.2211A>G synonymous_variant 0.67
rpoB 762233 c.2427G>C synonymous_variant 0.5
rpoB 762246 c.2440C>T synonymous_variant 0.5
rpoB 762254 c.2448T>G synonymous_variant 0.5
rpoB 762257 c.2451C>G synonymous_variant 0.5
rpoB 762266 c.2460T>C synonymous_variant 0.5
rpoB 762284 c.2478G>C synonymous_variant 1.0
rpoB 762293 c.2487T>C synonymous_variant 1.0
rpoB 762338 c.2532T>C synonymous_variant 1.0
rpoB 762347 c.2541T>C synonymous_variant 1.0
rpoB 762362 p.Glu852Asp missense_variant 1.0
rpoB 762369 c.2563T>C synonymous_variant 1.0
rpoC 762434 c.-936T>C upstream_gene_variant 1.0
rpoC 762449 c.-921C>A upstream_gene_variant 1.0
rpoC 762467 c.-903C>T upstream_gene_variant 1.0
rpoC 762794 c.-576C>G upstream_gene_variant 0.67
rpoB 762799 p.Ala998Gly missense_variant 0.67
rpoB 762810 p.Ala1002Ser missense_variant 0.67
rpoB 762813 p.Met1003Val missense_variant 0.67
rpoC 762818 c.-552C>G upstream_gene_variant 0.67
rpoC 762827 c.-543G>C upstream_gene_variant 1.0
rpoC 762857 c.-513C>G upstream_gene_variant 1.0
rpoC 762860 c.-510G>C upstream_gene_variant 1.0
rpoC 762863 c.-507T>C upstream_gene_variant 1.0
rpoC 763456 c.87A>G synonymous_variant 1.0
rpoC 763486 c.117T>G synonymous_variant 1.0
rpoC 763528 c.159G>A synonymous_variant 0.86
rpoC 763546 c.177A>G synonymous_variant 0.83
rpoC 763570 c.201G>C synonymous_variant 0.88
rpoC 763573 c.204G>C synonymous_variant 0.88
rpoC 763594 c.225C>T synonymous_variant 1.0
rpoC 763603 c.234C>T synonymous_variant 0.5
rpoC 763636 c.267T>C synonymous_variant 1.0
rpoC 763660 c.291T>G synonymous_variant 1.0
rpoC 763675 c.306C>G synonymous_variant 1.0
rpoC 763696 c.327T>C synonymous_variant 1.0
rpoC 763858 c.489A>G synonymous_variant 1.0
rpoC 764560 c.1191T>C synonymous_variant 1.0
rpoC 764566 c.1197C>G synonymous_variant 1.0
rpoC 764575 c.1206T>G synonymous_variant 1.0
rpoC 764581 c.1212T>C synonymous_variant 1.0
rpoC 764650 c.1281G>C synonymous_variant 1.0
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 1.0
rpoC 765553 c.2184C>T synonymous_variant 1.0
rpoC 765556 c.2187G>C synonymous_variant 1.0
rpoC 765559 c.2190G>C synonymous_variant 1.0
rpoC 765580 c.2211G>C synonymous_variant 1.0
rpoC 765835 c.2466C>T synonymous_variant 1.0
rpoC 765850 c.2481G>C synonymous_variant 1.0
rpoC 765883 c.2514C>G synonymous_variant 1.0
rpoC 765886 c.2517C>G synonymous_variant 1.0
rpoC 765892 c.2523T>C synonymous_variant 1.0
rpoC 765937 c.2568T>C synonymous_variant 1.0
rpoC 765967 c.2598C>T synonymous_variant 1.0
rpoC 765982 c.2613C>G synonymous_variant 1.0
rpoC 765994 c.2625A>T synonymous_variant 1.0
rpoC 766765 c.3396A>C synonymous_variant 1.0
rpoC 766774 c.3405T>C synonymous_variant 1.0
rpoC 766861 c.3492G>C synonymous_variant 1.0
rpoC 766864 c.3495G>C synonymous_variant 1.0
rpoC 766876 c.3507C>T synonymous_variant 1.0
rpoC 766882 c.3513C>T synonymous_variant 1.0
rpoC 766900 c.3531T>C synonymous_variant 1.0
rpoC 766933 c.3564A>G synonymous_variant 1.0
rpoC 766945 c.3576A>G synonymous_variant 1.0
rpoC 766963 c.3594T>C synonymous_variant 1.0
rpoC 766972 c.3603G>C synonymous_variant 1.0
rpoC 766996 c.3627C>T synonymous_variant 1.0
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 1.0
rpoC 767014 c.3645G>C synonymous_variant 1.0
rpoC 767033 c.3664_3666delTCGinsAGT synonymous_variant 1.0
rpoC 767059 c.3690T>G synonymous_variant 1.0
rpoC 767062 c.3693C>A synonymous_variant 1.0
rpsL 781736 c.177T>C synonymous_variant 1.0
rpsL 781742 c.183C>T synonymous_variant 1.0
rpsL 781748 c.189C>G synonymous_variant 1.0
rpsL 781754 c.195G>C synonymous_variant 1.0
rpsL 781760 c.201T>C synonymous_variant 1.0
rpsL 781772 c.213C>A synonymous_variant 1.0
rpsL 781808 c.249C>T synonymous_variant 1.0
rpsL 781811 c.252C>T synonymous_variant 1.0
rpsL 781832 c.273T>C synonymous_variant 1.0
rpsL 781838 c.279G>C synonymous_variant 1.0
rpsL 781841 c.282C>G synonymous_variant 1.0
rpsL 781865 c.306G>C synonymous_variant 1.0
rpsL 781868 c.309T>C synonymous_variant 1.0
rpsL 781871 c.312G>C synonymous_variant 1.0
rpsL 781877 c.318T>C synonymous_variant 0.8
rpsL 781892 c.333A>G synonymous_variant 1.0
rpsL 781898 c.339A>T synonymous_variant 1.0
rpsL 781916 c.357T>C synonymous_variant 1.0
rpsL 781929 p.Gly124Ser missense_variant 1.0
rplC 801127 p.Ala107Thr missense_variant 1.0
rplC 801132 c.324T>C synonymous_variant 1.0
rplC 801147 c.339T>C synonymous_variant 0.67
rplC 801150 c.342G>C synonymous_variant 0.67
rplC 801153 c.345G>C synonymous_variant 0.67
rplC 801156 c.348T>A synonymous_variant 0.67
rplC 801168 c.360C>G synonymous_variant 0.67
rplC 801171 c.363A>G synonymous_variant 0.67
rplC 801174 c.366T>C synonymous_variant 0.67
rplC 801195 c.387G>C synonymous_variant 0.67
rplC 801207 c.399C>T synonymous_variant 0.67
rplC 801246 c.438C>T synonymous_variant 0.67
rplC 801249 c.441T>C synonymous_variant 0.67
rplC 801255 c.447C>T synonymous_variant 0.67
rplC 801402 c.594T>C synonymous_variant 1.0
rplC 801405 c.597T>C synonymous_variant 1.0
rplC 801423 c.615G>C synonymous_variant 0.67
rplC 801426 c.618C>G synonymous_variant 0.67
rplC 801427 p.Met207Val missense_variant 0.67
rplC 801438 c.630T>C synonymous_variant 0.67
rplC 801442 p.Ile212Val missense_variant 0.67
fbiC 1303641 c.711C>T synonymous_variant 1.0
fbiC 1303650 c.720G>C synonymous_variant 1.0
fbiC 1303654 c.724C>T synonymous_variant 1.0
fbiC 1303659 c.729T>C synonymous_variant 1.0
fbiC 1303661 p.Val244Ala missense_variant 1.0
fbiC 1303663 c.733C>T synonymous_variant 1.0
fbiC 1303671 c.741C>T synonymous_variant 1.0
fbiC 1303674 c.744C>G synonymous_variant 1.0
fbiC 1303681 c.751T>C synonymous_variant 1.0
fbiC 1303686 c.756C>G synonymous_variant 1.0
fbiC 1303695 c.765T>C synonymous_variant 1.0
fbiC 1303704 c.774T>C synonymous_variant 1.0
fbiC 1303708 c.778T>C synonymous_variant 1.0
fbiC 1303761 c.831T>C synonymous_variant 1.0
fbiC 1303785 c.855G>C synonymous_variant 0.67
fbiC 1303836 c.906G>C synonymous_variant 0.67
fbiC 1303845 c.915C>G synonymous_variant 0.5
fbiC 1303846 p.Phe306Val missense_variant 0.5
fbiC 1303854 c.924T>C synonymous_variant 0.5
fbiC 1303860 c.930A>C synonymous_variant 0.5
fbiC 1303884 c.954T>G synonymous_variant 0.5
fbiC 1303905 c.975G>C synonymous_variant 0.5
fbiC 1304613 c.1683T>C synonymous_variant 0.75
fbiC 1304634 c.1704C>G synonymous_variant 0.75
fbiC 1304640 c.1710A>C synonymous_variant 0.67
fbiC 1304646 c.1716T>C synonymous_variant 0.67
fbiC 1304658 c.1728C>G synonymous_variant 0.67
fbiC 1304661 c.1731C>T synonymous_variant 0.67
fbiC 1304670 c.1740G>C synonymous_variant 0.67
fbiC 1304671 p.Val581Thr missense_variant 0.67
fbiC 1304675 p.Gly582Asp missense_variant 0.67
fbiC 1304691 c.1761G>C synonymous_variant 0.67
fbiC 1304694 c.1764A>C synonymous_variant 0.67
fbiC 1304703 c.1773C>G synonymous_variant 1.0
fbiC 1304817 c.1887T>C synonymous_variant 1.0
fbiC 1304829 c.1899T>C synonymous_variant 1.0
fbiC 1304832 c.1902C>T synonymous_variant 1.0
fbiC 1304856 c.1926C>G synonymous_variant 1.0
fbiC 1304862 c.1932G>A synonymous_variant 1.0
fbiC 1304869 c.1939C>T synonymous_variant 1.0
fbiC 1304875 p.Ile649Val missense_variant 1.0
fbiC 1304883 p.Glu651Asp missense_variant 1.0
fbiC 1304891 p.Ile654Thr missense_variant 1.0
fbiC 1304893 p.Gly655Ser missense_variant 1.0
fbiC 1304907 c.1977C>G synonymous_variant 1.0
fbiC 1304910 c.1980G>C synonymous_variant 1.0
fbiC 1304916 c.1986T>C synonymous_variant 1.0
fbiC 1304928 c.1998T>C synonymous_variant 1.0
fbiC 1304937 c.2007G>C synonymous_variant 1.0
fbiC 1304958 c.2028T>G synonymous_variant 1.0
fbiC 1305135 c.2205C>T synonymous_variant 1.0
fbiC 1305150 c.2220C>G synonymous_variant 1.0
fbiC 1305154 c.2224_2226delTTGinsCTA synonymous_variant 1.0
fbiC 1305173 p.Asn748Ser missense_variant 1.0
fbiC 1305177 c.2247A>G synonymous_variant 1.0
fbiC 1305181 c.2251T>C synonymous_variant 1.0
fbiC 1305186 c.2256C>T synonymous_variant 1.0
fbiC 1305276 c.2346G>C synonymous_variant 1.0
fbiC 1305331 p.Glu801Asn missense_variant 1.0
fbiC 1305336 c.2406T>C synonymous_variant 1.0
fbiC 1305372 c.2442G>A synonymous_variant 1.0
fbiC 1305384 c.2454G>C synonymous_variant 1.0
fbiC 1305396 c.2466C>G synonymous_variant 1.0
fbiC 1305405 c.2475A>G synonymous_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 1.0
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.67
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.67
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.67
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.67
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.67
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.67
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.67
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.75
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 1.0
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 1.0
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 1.0
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 1.0
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 1.0
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 1.0
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 1.0
rrs 1472669 n.824_825insTGGA non_coding_transcript_exon_variant 1.0
rrs 1472678 n.833T>G non_coding_transcript_exon_variant 1.0
rrs 1472679 n.834T>C non_coding_transcript_exon_variant 1.0
rrs 1472682 n.839_843delGGGAT non_coding_transcript_exon_variant 1.0
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 1.0
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 1.0
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 1.0
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 1.0
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 1.0
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.75
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.75
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.75
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.75
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 1.0
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>A non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 1.0
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 1.0
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 1.0
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 1.0
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 1.0
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 1.0
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 1.0
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 1.0
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 1.0
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 1.0
inhA 1674555 c.354G>A synonymous_variant 1.0
inhA 1674561 c.360C>T synonymous_variant 1.0
inhA 1674582 c.381T>C synonymous_variant 1.0
inhA 1674585 c.384T>C synonymous_variant 1.0
inhA 1674589 p.Met130Leu missense_variant 1.0
inhA 1674601 p.Leu134Thr missense_variant 1.0
inhA 1674624 c.423A>C synonymous_variant 1.0
inhA 1674660 c.459G>C synonymous_variant 1.0
rpsA 1833886 c.345C>G synonymous_variant 0.67
rpsA 1833928 c.387G>C synonymous_variant 0.67
rpsA 1833940 c.399C>G synonymous_variant 0.67
rpsA 1834435 c.894G>C synonymous_variant 0.67
rpsA 1834451 c.910T>C synonymous_variant 0.67
kasA 2518519 c.405G>C synonymous_variant 1.0
kasA 2518528 c.414C>G synonymous_variant 1.0
kasA 2518540 c.426T>C synonymous_variant 0.67
kasA 2518561 c.447T>C synonymous_variant 0.67
kasA 2518567 c.453G>C synonymous_variant 0.67
kasA 2518570 c.456G>C synonymous_variant 0.67
kasA 2518574 p.Ile154Val missense_variant 0.5
kasA 2518579 c.465T>C synonymous_variant 0.5
kasA 2518588 c.474T>C synonymous_variant 0.5
kasA 2518591 c.477G>C synonymous_variant 0.5
kasA 2518609 p.Met165Ile missense_variant 0.5
kasA 2518639 c.525G>C synonymous_variant 0.5
kasA 2518657 c.543G>C synonymous_variant 0.67
kasA 2518864 c.750G>C synonymous_variant 0.67
kasA 2518879 c.765A>G synonymous_variant 0.5
kasA 2518885 c.771T>C synonymous_variant 0.5
ahpC 2726579 c.387T>C synonymous_variant 1.0
ahpC 2726591 c.399C>G synonymous_variant 1.0
ahpC 2726593 p.Val134Ala missense_variant 1.0
ahpC 2726600 c.408T>C synonymous_variant 1.0
ahpC 2726601 p.Ile137Leu missense_variant 1.0
Rv2752c 3065040 c.1152C>G synonymous_variant 1.0
Rv2752c 3065048 c.1144C>T synonymous_variant 1.0
Rv2752c 3065052 c.1140G>A synonymous_variant 1.0
Rv2752c 3065055 c.1137T>C synonymous_variant 1.0
Rv2752c 3065064 c.1128G>C synonymous_variant 1.0
Rv2752c 3065073 c.1119C>G synonymous_variant 1.0
Rv2752c 3065079 c.1113T>C synonymous_variant 1.0
Rv2752c 3065082 c.1110G>C synonymous_variant 1.0
Rv2752c 3065087 c.1105A>C synonymous_variant 1.0
Rv2752c 3065088 c.1104A>G synonymous_variant 1.0
Rv2752c 3065109 c.1081_1083delAGAinsCGC synonymous_variant 1.0
Rv2752c 3065115 c.1077C>A synonymous_variant 1.0
Rv2752c 3065580 c.612G>C synonymous_variant 1.0
Rv2752c 3065586 c.606C>T synonymous_variant 1.0
Rv2752c 3065595 p.Leu199Phe missense_variant 1.0
Rv2752c 3065598 c.594G>T synonymous_variant 1.0
Rv2752c 3065607 c.585C>G synonymous_variant 1.0
Rv2752c 3065612 p.Thr194Ala missense_variant 1.0
Rv2752c 3065616 c.576C>T synonymous_variant 1.0
Rv2752c 3065622 c.570G>C synonymous_variant 1.0
Rv2752c 3065625 c.567G>C synonymous_variant 1.0
Rv2752c 3065634 c.558G>C synonymous_variant 1.0
Rv2752c 3065637 c.555A>G synonymous_variant 1.0
Rv2752c 3065640 c.552T>C synonymous_variant 1.0
Rv2752c 3065646 c.546C>G synonymous_variant 1.0
Rv2752c 3065649 c.543T>G synonymous_variant 1.0
Rv2752c 3065659 p.Pro178Leu missense_variant 1.0
Rv2752c 3065661 c.531A>G synonymous_variant 1.0
Rv2752c 3065664 c.526_528delTTGinsCTT synonymous_variant 1.0
Rv2752c 3065667 c.525A>G synonymous_variant 1.0
Rv2752c 3065675 p.Phe173Leu missense_variant 1.0
thyX 3067439 c.507A>G synonymous_variant 1.0
thyX 3067445 c.501C>G synonymous_variant 1.0
thyX 3067457 c.489C>G synonymous_variant 1.0
thyX 3067465 p.Ile161Val missense_variant 1.0
thyX 3067475 c.471A>G synonymous_variant 1.0
thyX 3067490 c.456C>G synonymous_variant 1.0
thyX 3067493 c.453A>G synonymous_variant 1.0
thyX 3067515 p.Ser144Thr missense_variant 1.0
thyX 3067530 p.Ala139Ser missense_variant 1.0
thyX 3067545 p.Glu134Ala missense_variant 1.0
thyX 3067549 p.Thr133Ala missense_variant 1.0
thyX 3067556 p.His130Gln missense_variant 1.0
thyX 3067559 c.387C>G synonymous_variant 1.0
thyX 3067718 c.228C>G synonymous_variant 1.0
thyX 3067721 c.225T>C synonymous_variant 1.0
thyX 3067727 c.219A>C synonymous_variant 1.0
thyX 3067736 p.Phe70Leu missense_variant 1.0
thyX 3067739 c.207T>C synonymous_variant 1.0
thyX 3067761 p.Arg62Lys missense_variant 1.0
thyX 3067765 p.Leu61Ile missense_variant 1.0
thyX 3067772 c.174C>G synonymous_variant 1.0
thyX 3067781 c.165C>A synonymous_variant 1.0
thyX 3067793 c.153T>C synonymous_variant 1.0
thyX 3067799 c.147G>A synonymous_variant 1.0
thyX 3067802 c.144C>G synonymous_variant 1.0
thyX 3067814 c.132T>C synonymous_variant 1.0
thyX 3067850 c.96A>C synonymous_variant 1.0
thyX 3067869 p.Thr26Ser missense_variant 1.0
rpoA 3877571 p.Pro313Ala missense_variant 1.0
rpoA 3877587 c.921A>G synonymous_variant 1.0
rpoA 3877613 p.Ile299Val missense_variant 1.0
rpoA 3877656 c.852T>G synonymous_variant 1.0
rpoA 3877668 c.840A>G synonymous_variant 1.0
rpoA 3877679 p.Ala277Ser missense_variant 1.0
rpoA 3877686 c.822A>G synonymous_variant 1.0
rpoA 3877692 c.816G>C synonymous_variant 1.0
rpoA 3877704 c.804G>C synonymous_variant 1.0
rpoA 3877743 c.765T>C synonymous_variant 1.0
rpoA 3877764 c.744C>G synonymous_variant 1.0
rpoA 3877770 c.738A>G synonymous_variant 1.0
rpoA 3877776 c.732T>C synonymous_variant 1.0
rpoA 3877782 c.726T>C synonymous_variant 1.0
rpoA 3877791 c.717C>G synonymous_variant 1.0
rpoA 3877857 c.651G>A synonymous_variant 1.0
rpoA 3877866 c.642G>C synonymous_variant 1.0
rpoA 3878001 c.507A>G synonymous_variant 1.0
rpoA 3878055 c.453A>G synonymous_variant 1.0
rpoA 3878058 c.450G>T synonymous_variant 1.0
rpoA 3878061 c.447G>C synonymous_variant 1.0
rpoA 3878067 c.441C>G synonymous_variant 1.0
rpoA 3878070 c.438T>C synonymous_variant 1.0
rpoA 3878076 c.432C>T synonymous_variant 1.0
rpoA 3878082 c.426T>G synonymous_variant 1.0
rpoA 3878094 c.414C>G synonymous_variant 1.0
rpoA 3878103 c.405A>G synonymous_variant 1.0
rpoA 3878106 c.402G>C synonymous_variant 1.0
rpoA 3878118 c.390T>C synonymous_variant 1.0
rpoA 3878130 c.378C>G synonymous_variant 1.0
rpoA 3878141 p.Met123Leu missense_variant 1.0
rpoA 3878143 p.Gly122Asp missense_variant 1.0
rpoA 3878271 c.237T>C synonymous_variant 1.0
rpoA 3878284 p.Glu75Ala missense_variant 1.0
rpoA 3878292 c.216T>C synonymous_variant 1.0
rpoA 3878298 c.210A>G synonymous_variant 1.0
rpoA 3878304 c.204G>C synonymous_variant 1.0
rpoA 3878313 c.195G>C synonymous_variant 1.0
rpoA 3878322 c.186A>G synonymous_variant 1.0
rpoA 3878331 c.177A>G synonymous_variant 1.0
rpoA 3878334 c.174T>C synonymous_variant 1.0
rpoA 3878337 c.171T>C synonymous_variant 1.0
rpoA 3878340 c.168C>T synonymous_variant 0.67
rpoA 3878346 c.162T>C synonymous_variant 1.0
rpoA 3878364 c.144A>T synonymous_variant 1.0
rpoA 3878367 c.141C>G synonymous_variant 0.67
rpoA 3878385 c.123C>G synonymous_variant 1.0
rpoA 3878388 c.120C>G synonymous_variant 1.0
rpoA 3878391 c.117T>C synonymous_variant 1.0
clpC1 4038530 p.Glu725Asp missense_variant 0.67
clpC1 4038596 c.2109A>G synonymous_variant 1.0
clpC1 4038770 c.1935C>T synonymous_variant 0.67
clpC1 4038773 c.1932T>C synonymous_variant 0.67
clpC1 4038782 c.1923G>C synonymous_variant 0.67
clpC1 4038812 c.1893T>C synonymous_variant 0.67
clpC1 4038821 c.1884G>A synonymous_variant 0.75
clpC1 4038845 c.1860G>C synonymous_variant 1.0
clpC1 4038860 c.1845G>C synonymous_variant 1.0
clpC1 4038878 c.1827A>G synonymous_variant 1.0
clpC1 4038953 c.1752A>G synonymous_variant 0.67
clpC1 4038956 c.1749T>C synonymous_variant 0.67
clpC1 4038965 c.1740T>C synonymous_variant 0.67
clpC1 4039064 c.1641C>T synonymous_variant 1.0
clpC1 4039112 c.1593C>G synonymous_variant 1.0
clpC1 4039121 c.1584T>C synonymous_variant 1.0
clpC1 4039226 c.1479T>C synonymous_variant 1.0
clpC1 4039229 c.1476C>G synonymous_variant 1.0
clpC1 4039454 c.1251A>G synonymous_variant 1.0
clpC1 4039463 c.1242C>G synonymous_variant 1.0
clpC1 4039466 c.1239T>C synonymous_variant 1.0
clpC1 4039469 c.1236T>C synonymous_variant 1.0
clpC1 4039480 c.1225C>A synonymous_variant 1.0
clpC1 4039481 c.1224T>G synonymous_variant 1.0
clpC1 4039517 c.1188C>G synonymous_variant 1.0
clpC1 4039556 c.1149G>C synonymous_variant 1.0
clpC1 4039559 c.1146C>G synonymous_variant 1.0
clpC1 4039562 c.1143C>G synonymous_variant 1.0
clpC1 4039565 c.1140G>C synonymous_variant 1.0
clpC1 4039570 p.Met379Leu missense_variant 1.0
clpC1 4039576 p.Ala377Pro missense_variant 1.0
clpC1 4039577 c.1128T>C synonymous_variant 1.0
clpC1 4039589 c.1116G>C synonymous_variant 1.0
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 1.0
clpC1 4040093 c.612C>G synonymous_variant 1.0
clpC1 4040105 c.600C>G synonymous_variant 1.0
clpC1 4040147 c.558A>G synonymous_variant 1.0
clpC1 4040162 c.543G>C synonymous_variant 1.0
clpC1 4040165 c.540G>C synonymous_variant 1.0
clpC1 4040171 c.534C>G synonymous_variant 1.0
embB 4247683 c.1170C>G synonymous_variant 1.0
embB 4247692 c.1179C>G synonymous_variant 1.0
embB 4247716 c.1203C>T synonymous_variant 1.0
embB 4247722 c.1209G>T synonymous_variant 1.0
embB 4247725 c.1212G>C synonymous_variant 1.0
embB 4247729 p.Gly406Pro missense_variant 1.0
embB 4247746 c.1233C>T synonymous_variant 1.0
embB 4247761 c.1248T>C synonymous_variant 1.0
embB 4247773 c.1260G>A synonymous_variant 1.0
embB 4247776 c.1263G>T synonymous_variant 1.0
embB 4247797 c.1284C>G synonymous_variant 1.0
embB 4247800 c.1287A>T synonymous_variant 1.0
embB 4247803 c.1290G>C synonymous_variant 1.0
embB 4247815 c.1302C>G synonymous_variant 1.0
embB 4247819 p.Val436Ile missense_variant 1.0
embB 4247830 c.1317A>G synonymous_variant 1.0
embB 4247836 c.1323A>G synonymous_variant 0.67
embB 4247839 c.1326G>C synonymous_variant 0.67
embB 4247932 c.1419C>G synonymous_variant 0.67
embB 4247940 p.Leu476Trp missense_variant 0.67
embB 4248007 c.1494C>G synonymous_variant 1.0
embB 4248011 p.Ser500Arg missense_variant 1.0
embB 4248014 p.Thr501Ala missense_variant 1.0
embB 4248035 p.Val508Ile missense_variant 1.0
embB 4248040 c.1527C>G synonymous_variant 1.0
embB 4248041 p.Ala510Thr missense_variant 1.0
embB 4248044 p.Lys511Ala missense_variant 1.0
embB 4248070 c.1557T>C synonymous_variant 1.0
embB 4248085 c.1572T>C synonymous_variant 1.0
embB 4248097 c.1584C>G synonymous_variant 1.0
embB 4248130 c.1617G>C synonymous_variant 1.0
embB 4248133 c.1620C>G synonymous_variant 1.0
embB 4248139 c.1626C>G synonymous_variant 1.0
embB 4248142 c.1629T>C synonymous_variant 1.0
embB 4248143 c.1630T>C synonymous_variant 1.0
embB 4248157 c.1644A>G synonymous_variant 1.0
embB 4248304 c.1791G>C synonymous_variant 1.0
embB 4248319 c.1806A>G synonymous_variant 1.0
embB 4248343 c.1830G>C synonymous_variant 1.0
embB 4248350 c.1837T>C synonymous_variant 1.0
embB 4248355 c.1842A>G synonymous_variant 1.0
embB 4248358 c.1845C>G synonymous_variant 1.0
embB 4248361 c.1848A>C synonymous_variant 1.0
embB 4248362 p.Ser617Ala missense_variant 1.0
embB 4248373 c.1860C>G synonymous_variant 1.0
embB 4248386 c.1873C>A synonymous_variant 1.0
embB 4248407 p.Leu632Val missense_variant 1.0
embB 4248410 p.Phe633Leu missense_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0