Run ID: ERR400374
Sample name:
Date: 01-04-2023 03:45:25
Number of reads: 231184
Percentage reads mapped: 99.4
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.99 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.97 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 760969 | p.Ser388Leu | missense_variant | 1.0 |
rpoB | 761723 | p.Glu639Asp | missense_variant | 1.0 |
Rv1258c | 1406461 | p.Ala294Thr | missense_variant | 0.67 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
pepQ | 2859984 | c.434delT | frameshift_variant | 0.67 |
embA | 4243875 | c.643C>T | synonymous_variant | 1.0 |
embB | 4249433 | p.Leu974Met | missense_variant | 1.0 |
aftB | 4267478 | c.1358delC | frameshift_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269522 | c.-686C>T | upstream_gene_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326465 | p.Ile337Val | missense_variant | 1.0 |