Run ID: ERR4187671
Sample name:
Date: 01-04-2023 04:40:37
Number of reads: 208015
Percentage reads mapped: 3.67
Strain: lineage4.9;La1.8.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1.8 | M.bovis | None | None | 1.0 |
La1.8.1 | M.bovis | None | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.94 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.71 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.67 | kanamycin, capreomycin, aminoglycosides, amikacin |
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 765958 | c.2589C>T | synonymous_variant | 0.4 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
Rv1258c | 1406266 | p.Ala359Thr | missense_variant | 0.5 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473097 | n.1252G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473147 | n.1302G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473283 | n.1438T>C | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473320 | n.1475G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473324 | n.1479G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475757 | n.2100A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475759 | n.2102C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475776 | n.2119G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475978 | n.2321C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.75 |
rpsA | 1834166 | p.Gly209Arg | missense_variant | 1.0 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
ndh | 2102193 | p.Arg284Trp | missense_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2715125 | p.Thr70Ala | missense_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 0.67 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
clpC1 | 4039916 | c.789T>C | synonymous_variant | 0.4 |
clpC1 | 4039929 | c.775_776delAGinsTC | synonymous_variant | 0.33 |
clpC1 | 4039931 | c.774T>C | synonymous_variant | 0.33 |
clpC1 | 4039937 | p.Val256Ile | missense_variant | 0.33 |
clpC1 | 4039946 | c.759A>C | synonymous_variant | 0.29 |
clpC1 | 4039949 | c.756G>C | synonymous_variant | 0.29 |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.29 |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.29 |
clpC1 | 4039988 | c.717C>G | synonymous_variant | 0.29 |
clpC1 | 4039994 | p.Glu237Asp | missense_variant | 0.33 |
clpC1 | 4040001 | p.His235Arg | missense_variant | 0.33 |
clpC1 | 4040009 | c.696C>G | synonymous_variant | 0.33 |
clpC1 | 4040015 | c.690G>C | synonymous_variant | 0.33 |
clpC1 | 4040018 | c.687G>C | synonymous_variant | 0.33 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.33 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.33 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.33 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4408237 | c.-35C>A | upstream_gene_variant | 1.0 |