Run ID: ERR4187744
Sample name:
Date: 2024-05-22T09:27:52.095297
Number of reads: 270215
Percentage reads mapped: 50.2
Median coverage: 5.0
Strain:
Spoligotype:
Drug-resistance: Sensitive
Lineage | Family | RDs | Frequency |
---|---|---|---|
La1.8.1 | M.bovis | None | 0.17 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
rplC | 801454 | p.Glu216Gln | missense_variant | 1.0 | linezolid | |
PPE35 | 2164652 | c.1146_*2996del | frameshift_variant&stop_lost&splice_region_variant | 0.96 | pyrazinamide | Uncertain significance |