Run ID: ERR4407521
Sample name:
Date: 01-04-2023 05:48:08
Number of reads: 519329
Percentage reads mapped: 98.8
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1407151 | p.Thr64Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471780 | n.-66G>T | upstream_gene_variant | 0.12 |
rrs | 1473143 | n.1298A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475420 | n.1763G>A | non_coding_transcript_exon_variant | 0.13 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.27 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169602 | c.1011C>A | synonymous_variant | 0.13 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518522 | p.Lys136Asn | missense_variant | 1.0 |
clpC1 | 4039705 | p.Lys334Glu | missense_variant | 0.11 |
clpC1 | 4040621 | c.84C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4246146 | p.Gly972Arg | missense_variant | 0.12 |
embB | 4246277 | c.-237G>A | upstream_gene_variant | 1.0 |
ethA | 4327296 | p.Tyr60His | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407945 | c.258C>T | synonymous_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |