Run ID: ERR4407546
Sample name:
Date: 01-04-2023 05:49:26
Number of reads: 546813
Percentage reads mapped: 99.2
Strain: lineage4
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
ethA | 4326531 | c.942dupC | frameshift_variant | 0.11 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6683 | p.Arg482Cys | missense_variant | 0.11 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8684 | p.Glu461Asp | missense_variant | 0.11 |
gyrA | 9064 | p.Ser588Cys | missense_variant | 1.0 |
gyrA | 9171 | p.Val624Leu | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 575159 | c.-189C>G | upstream_gene_variant | 0.12 |
ccsA | 620862 | c.972C>A | synonymous_variant | 0.1 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475465 | n.1808A>G | non_coding_transcript_exon_variant | 0.12 |
inhA | 1674448 | p.Gly83Trp | missense_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154915 | c.1197A>G | synonymous_variant | 1.0 |
katG | 2155366 | p.Arg249Leu | missense_variant | 0.1 |
PPE35 | 2169718 | p.Asn299Asp | missense_variant | 0.13 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289804 | c.-563T>C | upstream_gene_variant | 0.15 |
pncA | 2289935 | c.-694T>C | upstream_gene_variant | 0.11 |
thyA | 3074494 | c.-80_-24delCGCTGGGTTTGTTTGGCGGCGAGTCGCTGCGGCGGCTTCGCCGCGCTTGCGATCGCC | upstream_gene_variant | 0.15 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339189 | c.72C>T | synonymous_variant | 1.0 |
fbiD | 3339273 | c.156T>G | synonymous_variant | 0.18 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474080 | p.Ala25Val | missense_variant | 0.14 |
fprA | 3475252 | p.Lys416* | stop_gained | 0.14 |
Rv3236c | 3612665 | p.Val151Ala | missense_variant | 0.14 |
fbiA | 3641499 | p.Met319Ile | missense_variant | 0.1 |
fbiB | 3642034 | p.Ala167Asp | missense_variant | 0.13 |
rpoA | 3878285 | p.Glu75Lys | missense_variant | 0.11 |
rpoA | 3878352 | c.156C>T | synonymous_variant | 0.13 |
rpoA | 3878380 | p.Leu43Pro | missense_variant | 0.12 |
clpC1 | 4038856 | p.Lys617Gln | missense_variant | 0.14 |
embC | 4241525 | p.Gly555Cys | missense_variant | 0.15 |
embC | 4241843 | p.Leu661Ile | missense_variant | 0.11 |
embC | 4242248 | p.Ala796Thr | missense_variant | 0.1 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4246188 | p.Asn986Asp | missense_variant | 0.11 |
embB | 4246574 | p.Ala21Ser | missense_variant | 0.14 |
embB | 4246745 | p.Asp78Tyr | missense_variant | 0.11 |
embB | 4247221 | p.Leu236Phe | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |