TB-Profiler result

Run: ERR4798192
Summary

Run ID: ERR4798192

Sample name:

Date: 01-04-2023 08:11:53

Number of reads: 4207041

Percentage reads mapped: 99.8

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
fgd1 491377 p.Gly199Arg missense_variant 0.99
mshA 576108 p.Ala254Gly missense_variant 0.22
rpoB 761969 c.2163G>A synonymous_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
rpoA 3878630 c.-123G>C upstream_gene_variant 0.14
rpoA 3878637 c.-130G>C upstream_gene_variant 0.17
embB 4248851 c.2338C>T synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0