TB-Profiler result

Run: ERR4812015
Summary

Run ID: ERR4812015

Sample name:

Date: 01-04-2023 11:48:26

Number of reads: 41665

Percentage reads mapped: 99.04

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 0.96
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
fgd1 490915 p.Arg45Cys missense_variant 1.0
rpoC 764995 c.1626C>G synonymous_variant 1.0
rpoC 766346 p.Glu993Lys missense_variant 0.67
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
Rv1258c 1406441 c.900G>A synonymous_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
thyA 3073868 p.Thr202Ala missense_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0