Run ID: ERR4812278
Sample name:
Date: 01-04-2023 11:58:22
Number of reads: 100942
Percentage reads mapped: 99.65
Strain: lineage4.9;lineage4.3.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.86 |
lineage4.3.2 | Euro-American (LAM) | LAM3 | None | 0.19 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7858 | p.Ala186Glu | missense_variant | 0.4 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 763682 | p.Trp105Arg | missense_variant | 0.5 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 765190 | c.1821G>T | synonymous_variant | 0.33 |
rpoC | 765560 | p.Val731Met | missense_variant | 0.33 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289512 | c.-271G>C | upstream_gene_variant | 0.29 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
ddn | 3986878 | p.Pro12Leu | missense_variant | 0.5 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |