TB-Profiler result

Run: ERR4812333

Summary

Run ID: ERR4812333

Sample name:

Date: 01-04-2023 12:00:35

Number of reads: 3060948

Percentage reads mapped: 99.97

Strain: lineage4.9

Drug-resistance: Sensitive


Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576108 p.Ala254Gly missense_variant 0.28
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rpoA 3878609 c.-102T>A upstream_gene_variant 0.16
embB 4246584 p.Arg24Pro missense_variant 0.22
gid 4407775 p.Asp143Gly missense_variant 0.1