TB-Profiler result

Run: ERR4812492
Summary

Run ID: ERR4812492

Sample name:

Date: 01-04-2023 12:06:52

Number of reads: 47817

Percentage reads mapped: 98.4

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
mshA 575679 p.Asn111Ser missense_variant 1.0
rpoB 760115 c.309C>T synonymous_variant 1.0
embR 1416922 p.Leu142Phe missense_variant 0.67
kasA 2518076 c.-39C>T upstream_gene_variant 0.67
embC 4240737 p.Ser292Tyr missense_variant 1.0
embC 4243009 c.3150delA frameshift_variant 0.5