TB-Profiler result

Run: ERR4814478
Summary

Run ID: ERR4814478

Sample name:

Date: 01-04-2023 13:18:59

Number of reads: 146843

Percentage reads mapped: 97.1

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 760261 p.Pro152Gln missense_variant 1.0
rpoC 764398 c.1030delT frameshift_variant 0.67
kasA 2519143 c.1029G>T synonymous_variant 0.5
Rv2752c 3065117 c.1074delC frameshift_variant 0.4
embA 4243947 c.715C>A synonymous_variant 0.25
embA 4244855 c.1623G>A synonymous_variant 0.67