Run ID: ERR4814956
Sample name:
Date: 01-04-2023 13:35:23
Number of reads: 1783671
Percentage reads mapped: 99.93
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473928 | n.274delA | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476704 | n.3053delC | non_coding_transcript_exon_variant | 0.12 |
Rv2752c | 3066994 | c.-803A>G | upstream_gene_variant | 0.25 |
embC | 4240994 | p.Ala378Thr | missense_variant | 0.1 |