TB-Profiler result

Run: ERR4815023
Summary

Run ID: ERR4815023

Sample name:

Date: 01-04-2023 13:37:32

Number of reads: 2336

Percentage reads mapped: 10.13

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761999 c.2193G>C synonymous_variant 1.0
rpoB 762008 c.2202C>T synonymous_variant 1.0
rpoB 762014 c.2208C>T synonymous_variant 1.0
rpoB 762879 p.Met1025Leu missense_variant 1.0
rpoC 762899 c.-471G>C upstream_gene_variant 1.0
rpoC 763594 c.225C>T synonymous_variant 1.0
rpoC 763615 c.246G>C synonymous_variant 1.0
rpoC 763618 c.249C>T synonymous_variant 1.0
rpoC 763633 c.264T>C synonymous_variant 1.0
rpoC 763657 c.288G>A synonymous_variant 1.0
rpoC 763660 c.291T>G synonymous_variant 1.0
rpoC 763666 c.297G>A synonymous_variant 1.0
rpsA 1833829 c.288A>G synonymous_variant 1.0
rpsA 1833832 c.291G>A synonymous_variant 1.0
rpsA 1833838 c.297G>C synonymous_variant 1.0
rpsA 1833847 c.306C>G synonymous_variant 1.0
rpsA 1833856 c.315A>G synonymous_variant 1.0
rpsA 1833859 c.318C>T synonymous_variant 1.0
rpsA 1833874 c.333T>C synonymous_variant 1.0
rpsA 1833892 c.351G>A synonymous_variant 1.0
rpsA 1833894 p.Ala118Glu missense_variant 1.0
alr 3841033 p.Val130Ile missense_variant 1.0
alr 3841067 p.Ile118Thr missense_variant 1.0
rpoA 3877763 c.745C>T synonymous_variant 1.0
rpoA 3877764 c.744C>G synonymous_variant 1.0
rpoA 3877770 c.738A>G synonymous_variant 1.0
rpoA 3877776 c.732T>C synonymous_variant 1.0
clpC1 4039274 c.1431G>C synonymous_variant 1.0
clpC1 4039286 c.1419T>C synonymous_variant 1.0