Run ID: ERR4815043
Sample name:
Date: 01-04-2023 13:38:13
Number of reads: 345005
Percentage reads mapped: 99.28
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 0.98 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5321 | p.Lys28Glu | missense_variant | 0.1 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576315 | p.Ala323Glu | missense_variant | 0.25 |
ccsA | 620748 | c.858T>G | synonymous_variant | 0.44 |
rpoB | 759615 | c.-192A>C | upstream_gene_variant | 0.33 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.14 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775715 | c.2766G>A | synonymous_variant | 0.14 |
mmpL5 | 775718 | c.2763C>G | synonymous_variant | 0.14 |
mmpL5 | 775726 | c.2755C>T | synonymous_variant | 0.13 |
mmpL5 | 775727 | c.2754C>G | synonymous_variant | 0.13 |
mmpL5 | 775736 | c.2745C>G | synonymous_variant | 0.13 |
mmpL5 | 775741 | c.2740C>T | synonymous_variant | 0.12 |
mmpL5 | 775742 | c.2739C>T | synonymous_variant | 0.12 |
mmpL5 | 775747 | p.Met912Leu | missense_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302802 | c.-129G>A | upstream_gene_variant | 0.12 |
fbiC | 1303016 | p.Val29Gly | missense_variant | 0.29 |
fbiC | 1303144 | p.Ser72Pro | missense_variant | 0.12 |
fbiC | 1303155 | c.225G>A | synonymous_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.29 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.29 |
PPE35 | 2169269 | c.1344A>G | synonymous_variant | 0.17 |
PPE35 | 2169272 | c.1341C>A | synonymous_variant | 0.18 |
PPE35 | 2169278 | c.1335T>C | synonymous_variant | 0.18 |
PPE35 | 2169281 | c.1332T>G | synonymous_variant | 0.18 |
PPE35 | 2169287 | c.1326T>C | synonymous_variant | 0.18 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv1979c | 2223299 | c.-135G>C | upstream_gene_variant | 0.25 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
thyX | 3067357 | p.Ala197Pro | missense_variant | 0.29 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473983 | c.-24C>T | upstream_gene_variant | 0.17 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3642674 | c.1140C>T | synonymous_variant | 0.18 |
alr | 3840668 | c.753G>A | synonymous_variant | 0.2 |
panD | 4043993 | p.Arg97Trp | missense_variant | 1.0 |
embC | 4241650 | p.Leu596Phe | missense_variant | 0.14 |
embC | 4241711 | p.Arg617Trp | missense_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4246567 | c.54_55insT | frameshift_variant | 0.17 |
embB | 4247480 | p.Phe323Leu | missense_variant | 0.18 |
ubiA | 4269442 | p.Tyr131Cys | missense_variant | 0.22 |
whiB6 | 4338220 | p.Arg101His | missense_variant | 0.17 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338598 | c.-77G>A | upstream_gene_variant | 1.0 |