Run ID: ERR4815194
Sample name:
Date: 01-04-2023 13:43:38
Number of reads: 1229653
Percentage reads mapped: 99.94
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpsL | 781514 | c.-46G>A | upstream_gene_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473949 | n.292C>T | non_coding_transcript_exon_variant | 0.18 |
katG | 2154019 | p.Phe698Tyr | missense_variant | 0.1 |
PPE35 | 2170066 | p.Ala183Thr | missense_variant | 0.17 |