TB-Profiler result

Run: ERR4815263
Summary

Run ID: ERR4815263

Sample name:

Date: 01-04-2023 13:45:50

Number of reads: 728

Percentage reads mapped: 22.34

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 8897 c.1596T>C synonymous_variant 1.0
gyrA 8903 c.1602T>C synonymous_variant 1.0
gyrA 8924 c.1623C>A synonymous_variant 1.0
gyrA 8927 c.1626G>A synonymous_variant 1.0
gyrA 8930 c.1629C>G synonymous_variant 1.0
gyrA 8933 c.1632G>T synonymous_variant 1.0
gyrA 8939 c.1638T>G synonymous_variant 1.0
gyrA 8945 c.1644G>C synonymous_variant 1.0
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 1.0