Run ID: ERR4815619
Sample name:
Date: 01-04-2023 13:58:04
Number of reads: 1504009
Percentage reads mapped: 99.95
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
ccsA | 619831 | c.-60T>G | upstream_gene_variant | 0.25 |
ccsA | 620748 | c.858T>G | synonymous_variant | 0.24 |
fbiC | 1304839 | p.Glu637Gln | missense_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475194 | n.1537C>A | non_coding_transcript_exon_variant | 0.1 |
PPE35 | 2170066 | p.Ala183Thr | missense_variant | 0.22 |