TB-Profiler result

Run: ERR4815635

Summary

Run ID: ERR4815635

Sample name:

Date: 01-04-2023 13:58:41

Number of reads: 1463196

Percentage reads mapped: 99.96

Strain: lineage4.9

Drug-resistance: Sensitive


Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576751 p.Lys468Asn missense_variant 0.33
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474345 n.688A>G non_coding_transcript_exon_variant 0.5
rrl 1475229 n.1572A>G non_coding_transcript_exon_variant 0.67
rrl 1476710 n.3053C>T non_coding_transcript_exon_variant 0.12
ahpC 2726338 p.Val49Gly missense_variant 0.24