Run ID: ERR4815703
Sample name:
Date: 01-04-2023 14:01:00
Number of reads: 1555441
Percentage reads mapped: 99.96
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
fgd1 | 490751 | c.-32T>G | upstream_gene_variant | 0.26 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473677 | n.20C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474433 | n.776G>T | non_coding_transcript_exon_variant | 0.14 |
thyA | 3074648 | c.-177T>G | upstream_gene_variant | 0.12 |