TB-Profiler result

Run: ERR4815877
Summary

Run ID: ERR4815877

Sample name:

Date: 01-04-2023 14:06:47

Number of reads: 1311211

Percentage reads mapped: 99.95

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472470 n.625C>G non_coding_transcript_exon_variant 0.11
rrl 1473607 n.-51C>T upstream_gene_variant 0.11
rrl 1473845 n.188G>A non_coding_transcript_exon_variant 0.2
rrl 1474286 n.629C>T non_coding_transcript_exon_variant 0.25
rrl 1475688 n.2031G>A non_coding_transcript_exon_variant 0.18
PPE35 2170066 p.Ala183Thr missense_variant 0.14