Run ID: ERR4816110
Sample name:
Date: 20-10-2023 08:00:44
Number of reads: 1684218
Percentage reads mapped: 94.34
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476299 | n.2642C>T | non_coding_transcript_exon_variant | 0.4 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2156045 | p.Val23Leu | missense_variant | 0.97 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
fbiA | 3641129 | p.Ala196Val | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |