TB-Profiler result

Run: ERR4816254
Summary

Run ID: ERR4816254

Sample name:

Date: 01-04-2023 14:19:32

Number of reads: 1153

Percentage reads mapped: 16.13

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoC 763594 c.225C>T synonymous_variant 1.0
rpoC 763633 c.264T>C synonymous_variant 1.0
rpoC 763636 c.267T>C synonymous_variant 1.0
rpoC 763642 c.273G>C synonymous_variant 1.0
embB 4247491 c.978G>C synonymous_variant 1.0
embB 4247497 c.984T>C synonymous_variant 1.0
embB 4247512 c.999T>C synonymous_variant 1.0
embB 4247539 c.1026T>C synonymous_variant 1.0
embB 4247554 c.1041T>C synonymous_variant 1.0
embB 4247566 c.1053C>A synonymous_variant 1.0
embB 4247572 c.1059A>G synonymous_variant 1.0