TB-Profiler result

Run: ERR4816291
Summary

Run ID: ERR4816291

Sample name:

Date: 01-04-2023 14:20:52

Number of reads: 1715233

Percentage reads mapped: 99.82

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472434 n.589T>A non_coding_transcript_exon_variant 0.15
rrs 1472762 n.922delG non_coding_transcript_exon_variant 0.14
rrl 1473829 n.172G>C non_coding_transcript_exon_variant 0.12
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 0.14
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.18
rrl 1473839 n.182G>A non_coding_transcript_exon_variant 0.18
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.25
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.25
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.25
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.29
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.29
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.25
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.29
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.33
rrl 1474499 n.842G>T non_coding_transcript_exon_variant 0.29
embB 4249733 p.Pro1074Thr missense_variant 0.1