Run ID: ERR4816360
Sample name:
Date: 01-04-2023 14:23:08
Number of reads: 826262
Percentage reads mapped: 97.86
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417298 | p.Gly17Glu | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.5 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086739 | c.-81G>A | upstream_gene_variant | 1.0 |
fbiA | 3640689 | p.Asp49Glu | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246277 | c.-237G>A | upstream_gene_variant | 1.0 |
embB | 4247676 | p.Ala388Asp | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407945 | c.258C>T | synonymous_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |