Run ID: ERR4816877
Sample name:
Date: 01-04-2023 14:40:56
Number of reads: 1252673
Percentage reads mapped: 99.93
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6934 | c.-368A>G | upstream_gene_variant | 0.13 |
fgd1 | 491027 | p.Asn82Thr | missense_variant | 0.29 |
mshA | 576365 | p.Phe340Leu | missense_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475349 | n.1692T>C | non_coding_transcript_exon_variant | 0.1 |
fbiB | 3642199 | p.Val222Gly | missense_variant | 0.13 |