Run ID: ERR4816902
Sample name:
Date: 01-04-2023 14:41:46
Number of reads: 1200333
Percentage reads mapped: 99.97
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
fgd1 | 491027 | p.Asn82Thr | missense_variant | 0.23 |
ccsA | 619831 | c.-60T>G | upstream_gene_variant | 0.24 |
ccsA | 620748 | c.858T>G | synonymous_variant | 0.29 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472088 | n.243T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472348 | n.503T>C | non_coding_transcript_exon_variant | 0.11 |