TB-Profiler result

Run: ERR4816903
Summary

Run ID: ERR4816903

Sample name:

Date: 01-04-2023 14:41:51

Number of reads: 1027004

Percentage reads mapped: 99.74

Strain: lineage4.8

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
rpoB 761967 p.Glu721Lys missense_variant 0.94
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
inhA 1674439 p.Glu80Gln missense_variant 0.11
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2169122 c.1491C>G synonymous_variant 1.0
PPE35 2169125 p.Val496Ile missense_variant 1.0
PPE35 2169131 c.1482C>T synonymous_variant 1.0
PPE35 2169134 c.1479G>A synonymous_variant 1.0
PPE35 2169141 p.Thr491Met missense_variant 1.0
PPE35 2169144 p.Val490Ala missense_variant 1.0
PPE35 2169149 c.1464G>A synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289972 c.-731T>G upstream_gene_variant 1.0
kasA 2518169 p.Val19Ile missense_variant 1.0
kasA 2518348 c.234A>T synonymous_variant 0.18
ald 3087095 c.276C>T synonymous_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 0.91
embB 4246544 p.Thr11Pro missense_variant 0.17
embB 4246548 p.Pro12Gln missense_variant 0.17
embB 4246555 c.42G>C synonymous_variant 0.17
embB 4246556 p.Ala15Pro missense_variant 0.17
embB 4246563 p.Leu17Trp missense_variant 0.17
embB 4246567 c.54G>T synonymous_variant 0.14
aftB 4268656 p.Thr61Ala missense_variant 0.14
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0