TB-Profiler result

Run: ERR4816915
Summary

Run ID: ERR4816915

Sample name:

Date: 01-04-2023 14:42:08

Number of reads: 1173435

Percentage reads mapped: 99.95

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gid 4408100 c.102dupG frameshift_variant 0.1 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 575350 c.3G>A start_lost 0.13
mshA 576488 p.Val381His missense_variant 0.2
rpoC 766720 p.Asp1117Glu missense_variant 0.12
mmpL5 777495 p.Leu329Pro missense_variant 0.15
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
katG 2154613 p.Gln500Arg missense_variant 0.1
fprA 3474876 c.870C>G synonymous_variant 0.12
clpC1 4040079 p.Lys209Arg missense_variant 0.12
embB 4249276 c.2763A>T synonymous_variant 0.1