TB-Profiler result

Run: ERR4817049
Summary

Run ID: ERR4817049

Sample name:

Date: 01-04-2023 14:46:29

Number of reads: 20199

Percentage reads mapped: 97.93

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
fgd1 490857 c.75C>T synonymous_variant 0.5
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
katG 2155250 p.Pro288Thr missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
clpC1 4039645 p.His354Asp missense_variant 0.5
embB 4248158 p.Cys549Arg missense_variant 1.0
ethA 4326139 p.Glu445Asp missense_variant 0.33
gid 4407588 c.615A>G synonymous_variant 1.0